PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G245200.3
Common NameB456_010G245200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 250aa    MW: 27735.9 Da    PI: 5.7209
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G245200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.95.7e-10445439
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        + C+ +++  ++lfC+ ++ +lC++C +++H        H +
  Gorai.010G245200.3  4 KLCDSCKSATATLFCRPDSAFLCPNCDSKIHAAnklasrHAR 45
                        68*****************************65566666655 PP

2zf-B_box28.14.3e-094791442
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         +C+ +e+ +++  C+ +   lC +C   +H++      H++vpl
  Gorai.010G245200.3 47 LVCEVCEQAPAHVTCKADAAALCVTCDRDIHSSnplarrHERVPL 91
                        68*****************************77999999**9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.48148IPR000315B-box-type zinc finger
SMARTSM003362.6E-13148IPR000315B-box-type zinc finger
PfamPF006432.6E-7445IPR000315B-box-type zinc finger
CDDcd000213.39E-7548No hitNo description
PROSITE profilePS5011911.3054491IPR000315B-box-type zinc finger
PfamPF006433.9E-74791IPR000315B-box-type zinc finger
CDDcd000211.44E-74891No hitNo description
SMARTSM003364.6E-104991IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRP DSAFLCPNCD SKIHAANKLA SRHARVLVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSSN PLARRHERVP LAPFYDSVKP NTAFNFLDDR YLSDVDGDAD  120
SSREEAEAAS WLLPNPNHKA HESPDVNTGQ YVFPEMDPYL DLDYGHVDPK IETQDQEQNS  180
SGTDGVVPVQ SNTVQAPMVN DHCFDMEFTT PKALPYGYNY NCNYNPHCLS HSFQMAVVRL  240
RTYQSRARK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.3440.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2017610.0KM201761.1 Gossypium raimondii CONSTANS-like 3 protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451874.11e-175PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-105COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A0D2UID40.0A0A0D2UID4_G
STRINGfgenesh2_kg.6__2487__AT5G24930.11e-104(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.14e-98CONSTANS-like 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]